Recent publications and pre-prints ✉ corresponding author    † equal contribution
  • Hadigol, M. and Khiabanian H. MERIT: a Mutation Error Rate Identification Toolkit for Ultra-deep Sequencing Applications. bioRxiv 2017. bioRxiv
  • Rabadan R., Bhanot, G. Marsilio S., Chiorazzi N., Pasqualucci L., Khiabanian H. On statistical modeling of sequencing noise in high depth data to assess tumor evolution. bioRxiv 2017. bioRxiv
  • Gorshein E., Wei C., …, Khiabanian H. , Strair, R. . Lactobacillus rhamnosus GG probiotic enteric regimen does not provide protection against GVHD after allogeneic hematopoietic stem cell transplantation. Clinical Transplantation 2017. PMID:28256022
  • Abate F. , Almeida da Silva A. , et al. Activating mutations and translocations in the guanine exchange factor VAV1 in peripheral T-cell lymphomas. Proceedings of the National Academy of Sciences 2017. PMID:28062691
  • Uhlemann AC., et al. Evolutionary Dynamics of Pandemic Methicillin-Sensitive Staphylococcus aureus ST398 and Its International Spread via Routes of Human Migration. mBio 2017. PMID:28096484
  • Oshima K. , Khiabanian H. ,
    Oshima, Khiabanian et al. PNAS 2016
    et al. Mutational landscape, clonal evolution patterns and role of RAS mutations in relapsed acute lymphoblastic leukemia. Proceedings of the National Academy of Sciences 2016. PMID:27655895
  • Zairis S., Khiabanian H., Blumberg A., Rabadan R. Genomic data analysis in tree spaces. arXiv 2016. arXiv
  • Spina V. , Khiabanian H. , et al. The Genetics of Nodal Marginal Zone Lymphoma. Blood 2016. PMID:27335277
  • Rasi S. , Khiabanian H. , et al. Clinical impact of small subclones harboring NOTCH1, SF3B1, or BIRC3 mutations in chronic lymphocytic leukemia. Haematologica 2016. PMID:26819056
  • Paganin M., et al. A Case of T‐cell Acute Lymphoblastic Leukemia Relapsed As Myeloid Acute Leukemia. Pediatr Blood Cancer 2016. PMID:27149388
  • Paratala B., et al. Emerging role of genomic rearrangements in breast cancer: applying knowledge from other cancers. Biomarkers in Cancer 2016. PMID:26917980
  • Almeida da Silva A. , Abate F. , Khiabanian H., et al. The mutational landscape of cutaneous T cell lymphoma and Sézary syndrome. Nature Genetics 2015. PMID:26551667
  • Lee A. , Kulcsar K. , Elliott O., Khiabanian H., et al. Transcriptome Reconstruction and Annotation of the Egyptian Rousette Bat. BMC Genomics 2015. PMID:26643810
  Earlier publications ✉ corresponding author    † equal contribution
  • Emmett K., Lee A., Khiabanian H. ,
    Emmett et al. PLoS Curr. 2015
    Rabadan R. High-resolution genomic surveillance of 2014 ebolavirus using shared subclonal variants. PLoS Currents 2015. PMID:25737802
  • Rossi D. , Khiabanian H. , et al. Clinical impact of small TP53 mutated subclones in chronic lymphocytic leukemia. Blood 2014 (Plenary paper). PMID:24501221
  • Palomero T. , Couronné L. , Khiabanian, H. , et al. Recurrent mutations in epigenetic regulators, RHOA and FYN kinase in peripheral T cell lymphomas. Nature Genetics 2014. PMID:24413734
  • Wang J. , Khiabanian H. , Rossi D. , et al. Tumor Evolutionary Directed Graphs and the History of Chronic Lymphocytic Leukemia. eLife 2014. PMID:25496728
  • Khiabanian H. , et al. Viral diversity and clonal evolution from unphased genomic data. BMC Genomics 2014. PMID:25573168
  • Lee A. , Khiabanian, H. , et al. Transcriptome Reconstruction and Annotation of Cynomolgus and African Green Monkey. BMC Genomics 2014. PMID:25277458
  • Zairis S., Khiabanian H., Blumberg A., Rabadan
    Zairis et al. LNCS 2014
    R. Moduli spaces of phylogenetic trees describing tumor evolutionary patterns. Lecture Notes in Computer Science Volume 8609 2014. Springer
  • Pasqualucci L., Khiabanian H., et al. Genetics of follicular lymphoma transformation. Cell Reports 2014. PMID:24388756
  • Melamed R., Khiabanian H., Rabadan R. Data-driven discovery of seasonally linked diseases from an Electronic Health Records system. BMC Bioinformatics 2014. PMID:25078762
  • Messina M., Del Giudice I., Khiabanian H., et al. Genetic lesions associated with chronic lymphocytic leukemia chemo-refractoriness. Blood 2014. PMID:24550227
  • Kode A. et al. Leukemogenesis Induced by an Activating β-catenin mutation in Osteoblasts. Nature 2014. PMID:24429522
  • Fabbri G. , Khiabanian H. ,
    Fabbri, Khiabanian et al. JEM 2013
    et al. Genetic lesions associated with chronic lymphocytic leukemia transformation to Richter syndrome. The Journal of Experimental Medicine 2013. PMID:24127483
  • Tzoneva G. , Perez Garcia A. , Carpenter Z. , Khiabanian H., et al. Activating mutations in the NT5C2 nucleotidase gene drive chemotherapy resistance in relapsed ALL. Nature Medicine 2013. PMID:23377281
  • Blair D.R., et al. A nondegenerate code of deleterious variants in mendelian Loci contributes to complex disease risk. Cell 2013. PMID:24074861
  • Rossi D., et al. Integrated Mutational and Cytogenetic Analysis Identifies New Prognostics Subgroups in Chronic Lymphocytic Leukemia. Blood 2013. PMID:23243274
  • Dapito D.H., et al. Promotion of hepatocellular carcinoma by the intestinal microbiota and TLR4. Cancer Cell 2012. PMID:22516259
  • Holmes A.B., Hawson A., Liu F., Friedman C., Khiabanian H. , Rabadan R. Discovering Disease Associations by Integrating Electronic Clinical Data and Medical Literature. PLoS One 2011. PMID:21731656
  • Rossi D., Bruscaggin A., Spina V., Rasi S., Khiabanian H., et al. Mutations of the SF3B1 splicing factor in chronic lymphocytic leukemia: association with progression and fludarabine-refractoriness. Blood 2011. PMID:22039264
  • Fabbri G., Rasi S., Rossi D., Trifonov V., Khiabanian H., et al. Analysis of the Chronic Lymphocytic Leukemia Coding Genome: Role of NOTCH1 Mutational Activation. The Journal of Experimental Medicine 2011. PMID:21670202
  • Hernandez C., Chan J., Khiabanian H., Rabadan R. Understanding the Origins of a Pandemic Virus. arXiv:1104.4568 2011. arXiv
  • Greenbaum B., Trifonov V., Khiabanian H., Levine A., Rabadan R. The Emergence of 2009 H1N1 Pandemic Influenza. In: G. Del Giudice and R. Rappuoli (eds.). Influenza Vaccines for the Future. 2nd edition 2011. Springer
  • Van Vlierberghe P. , Palomero T. , Khiabanian H., et al. PHF6 mutations in T-cell acute lymphoblastic leukemia. Nature Genetics 2010. PMID:20228800
  • Khiabanian H. , et al. Signs of the 2009 Influenza Pandemic in the New York-Presbyterian Hospital Electronic Health Records. PLoS One 2010. PMID:20844592
  • Khiabanian H. , et al. ParMap, an algorithm for the identification of small genomic insertions and deletions in nextgen sequencing data. BMC Research Notes 2010. PMID:20507604
  • Khiabanian H. , Trifonov V., Rabadan
    Trifonov et al. NEJM 2009
    R. Reassortment Patterns in Swine Influenza Viruses. PLoS One 2009. PMID:19809504
  • Khiabanian H. , et al. Differences in Patient Age Distribution between Influenza A Subtypes. PLoS One 2009. PMID:19718262
  • Trifonov V., Khiabanian H., Rabadan R. Geographic Dependence, Surveillance and the Origins of the 2009 Influenza A (H1N1) Virus. The New England Journal of Medicine 2009. PMID:19474418
  • Trifonov V., Khiabanian H., Greenbaum B., Rabadan R. The origin of the recent swine influenza A (H1N1) virus infecting humans. Eurosurveillance 2009. PMID:19422769
  • Kubo J., Khiabanian H., Dell’Antonio I., et al. Dark
    Khiabanian et al. ApJ 2008
    Matter Staructures in the Deep Lens Survey. The Astrophysical Journal 2009. NASA ADS
  • Khiabanian H. and Dell’Antonio I. A Multi-Resolution Weak Lensing Reconstruction Method. The Astrophysical Journal 2008. NASA ADS
  • Khiabanian H. A Maximum-Likelihood Multi-Resolution Weak Lensing Mass Reconstruction Method. Doctoral Dissertation. Brown University 2008. NASA ADS
  • Kubo J., et al. The Mass of Coma Cluster from Weak Lensing in SDSS. The Astrophysical Journal 2007. NASA ADS


© Khiabanian Lab 2015

Rutgers University
Rutgers Cancer Institute
Center for Systems and Computational Biology
Department of Pathology and Laboratory Medicine


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